PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400021691

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 640aa MW: 70504.9 Da PI: 6.2713

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400021691	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.6	1e-07	607	632	1	26
RWP-RK 1 aekeisledlskyFslpikdAAkeLg 26 aek+isle+l++yF++++kdAAk+Lg PGSC0003DMP400021691 607 AEKTISLEVLQQYFAGSLKDAAKSLG 632 589*********************98 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence Send to blast
MNFIFRSKPK EFAPPPPAPA TALQQQQHAA GENHRESLMM DLDLDLDASW SFDQIFAAAA 60 SASNPMSPFL VPAASEQPCS PLWAFSDENE DKPNGNALSS GSLRLSNYPR FVTYANEHEA 120 APETVSVTDD KKRIPLPIKG LAPLDYLDSS CIIKERMTQA LRYFKESTGE RVLAQIWAPV 180 KNGGRYVLTT SGQPFVLDPD CNGLHQYRMV SLMYMFSVDG ETDGVLGLPG RVYRKKLPEW 240 TPNVQYYSSK EFPRLNHALD YNVRGTLALP VFEPSGQSCV GVLELIMTSQ KINYAPEVDK 300 VCKALEAVNL KSSEILDYPN HQICNEGRQN ALVEILEILT AVCETYKLPL AQTWVPCRHR 360 SVLADGGGFK KSCSSFDGSC MGQVCMSTTD VAFYVVDAHM WGFREACAEH HLQKGQGVAG 420 RAYASQKSCF CEDIGQFCKT EYPLVHYARL FGLSSCLAIC LRSTHTGNDD YILEFFLPPN 480 DGDYTDQLAL LNSLLLTMKQ HFRSLRVASG EELEHNWGSV EIIKASTEEK LGSRFDSVPT 540 TKSLPQSASV ANGRTHPDLM EEQQSPVALN VAKGAEGVNG TAEAHNHASV PENKQTGKKS 600 ERKRGKAEKT ISLEVLQQYF AGSLKDAAKS LGGTLFKIL*

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence Send to blast

MNFIFRSKPK EFAPPPPAPA TALQQQQHAA GENHRESLMM DLDLDLDASW SFDQIFAAAA  60
SASNPMSPFL VPAASEQPCS PLWAFSDENE DKPNGNALSS GSLRLSNYPR FVTYANEHEA  120
APETVSVTDD KKRIPLPIKG LAPLDYLDSS CIIKERMTQA LRYFKESTGE RVLAQIWAPV  180
KNGGRYVLTT SGQPFVLDPD CNGLHQYRMV SLMYMFSVDG ETDGVLGLPG RVYRKKLPEW  240
TPNVQYYSSK EFPRLNHALD YNVRGTLALP VFEPSGQSCV GVLELIMTSQ KINYAPEVDK  300
VCKALEAVNL KSSEILDYPN HQICNEGRQN ALVEILEILT AVCETYKLPL AQTWVPCRHR  360
SVLADGGGFK KSCSSFDGSC MGQVCMSTTD VAFYVVDAHM WGFREACAEH HLQKGQGVAG  420
RAYASQKSCF CEDIGQFCKT EYPLVHYARL FGLSSCLAIC LRSTHTGNDD YILEFFLPPN  480
DGDYTDQLAL LNSLLLTMKQ HFRSLRVASG EELEHNWGSV EIIKASTEEK LGSRFDSVPT  540
TKSLPQSASV ANGRTHPDLM EEQQSPVALN VAKGAEGVNG TAEAHNHASV PENKQTGKKS  600
ERKRGKAEKT ISLEVLQQYF AGSLKDAAKS LGGTLFKIL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400021691

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343817.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	M1AWJ9	0.0	M1AWJ9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031945	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400021691

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]