PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021798
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 308aa    MW: 35039.9 Da    PI: 5.6413
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021798genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.6e-28126184259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve+s +++ ++++tY+ eHnh+
  PGSC0003DMP400021798 126 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEQSCTENGTFIVTYTAEHNHS 184
                           79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-30111186IPR003657WRKY domain
PROSITE profilePS5081131.559120186IPR003657WRKY domain
SuperFamilySSF1182902.35E-25122186IPR003657WRKY domain
SMARTSM007741.0E-32125185IPR003657WRKY domain
PfamPF031065.6E-24127183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDWGLQAVVI GSSSSCSANN IDFSPKLDFQ ESDHQYLSFS HEMKKEFFSD ELEELYKPFY  60
HVDGGQNMLM GSSISLIPKE IIKEEKREEE QQQVVAPTST YVPKYKKRKN EQKRVVLQLK  120
ADDLSSDKWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KQVEQSCTEN GTFIVTYTAE  180
HNHSQPTRRN SLAGTIKSKF PNSKNTINSH KKSIVKDEKI SSPHGSTSNN LGFSPETLMI  240
DEFQEIEINQ ENNHEEIKNM FEGSDENECV SIQEMFDGDF FAGLEDIHDG FTSSSFGCNN  300
STFPFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17114186274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400021798
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343927.10.0PREDICTED: probable WRKY transcription factor 29
TrEMBLM1AWU60.0M1AWU6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000320910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-34WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]