PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400021997

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 248aa MW: 27344.1 Da PI: 6.0297

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400021997	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.2	1.3e-11	169	214	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ PGSC0003DMP400021997 169 KRIKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 214 899**********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-14	165	229	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.68	167	219	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.96E-12	169	223	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.2E-14	169	220	No hit	No description
Pfam	PF00170	2.7E-10	169	213	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.93E-25	170	220	No hit	No description
PROSITE pattern	PS00036	0	172	187	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAHNWPFQNM PPLPNSSTIV ANHHSTNSWV DDFLDFSSSR RNSHRRSVSD PIAFVEAPFL 60 QQCRGNGLNN GFDKLDDEQL TTMFSDDSGA GAAFAVTAPC SNPSSTNPST PSDQVSENED 120 QKSPVRLEVN QVVQPKNEPG EDDSDNQSPV ASKNAVNDSS DNNSIVDPKR IKRILANRQS 180 AQRSRVRKLQ YISELERSVT TLQTEVSALS PRVAFLDHQR LLLNVDNSAL RQRIAALAQD 240 KIFKDGK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400021997

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006348282.1	1e-180	PREDICTED: basic leucine zipper 34-like
Swissprot	Q9M2K4	3e-66	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	M1AXC0	1e-180	M1AXC0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400032381	1e-179	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	7e-56	bZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400021997

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]