PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022005
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 178aa    MW: 20773.6 Da    PI: 8.3497
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022005genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-181771357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          ++ ++++eq++ Le+ F ++++++ e++ +LA++lg++ rq+++W+qNrRa++k+
  PGSC0003DMP400022005 17 NKKRLNQEQVRLLEASFDSTKKLDLEKKLQLARELGVPPRQISIWYQNRRARWKN 71
                          56789************************************************95 PP
2HD-ZIP_I/II101.67e-3317108293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +k+rl++eqv+lLE sF++++kL+ e+K +lareLg+ prq+ +W+qnrRAR+k++ +E+dy+aL+ ++++  +e+++Leke+e L+ e
  PGSC0003DMP400022005  17 NKKRLNQEQVRLLEASFDSTKKLDLEKKLQLARELGVPPRQISIWYQNRRARWKNQCMENDYNALQVKLENALSEKRQLEKETEILQGE 105
                           79*************************************************************************************99 PP

           HD-ZIP_I/II  91 lke 93 
                           l++
  PGSC0003DMP400022005 106 LEK 108
                           976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.4871272IPR001356Homeobox domain
SuperFamilySSF466896.53E-181381IPR009057Homeodomain-like
SMARTSM003892.7E-171476IPR001356Homeobox domain
CDDcd000863.81E-141572No hitNo description
PfamPF000463.7E-161771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-191979IPR009057Homeodomain-like
PRINTSPR000313.1E-54352IPR000047Helix-turn-helix motif
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
PRINTSPR000313.1E-55268IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MNSSFNSQNL QKYSKHNKKR LNQEQVRLLE ASFDSTKKLD LEKKLQLARE LGVPPRQISI  60
WYQNRRARWK NQCMENDYNA LQVKLENALS EKRQLEKETE ILQGELEKAN EMLIGLKSGA  120
QGQIREFRLS SSCCEDVISY SSKWVHNYEV NYCNLQIDEL YPMIGVEEGT KKCCSTW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791458.13e-74PREDICTED: homeobox-leucine zipper protein ATHB-52-like
RefseqXP_016444534.13e-74PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLM1AXC81e-127M1AXC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000323901e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.15e-28homeobox protein 52
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]