PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022109
Common NameLOC107062809
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 214aa    MW: 23580.6 Da    PI: 5.0788
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022109genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.4e-153179255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t++ Aa+a++ a+++l+g
  PGSC0003DMP400022109 31 IYRGIR-CR-SGKWVCEIREPRK---TTRIWLGTYPTPQTAAAAYDVAALALKG 79
                          69***9.55.6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.32E-123063No hitNo description
PfamPF008471.3E-93079IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-163189IPR016177DNA-binding domain
PROSITE profilePS5103219.0583188IPR001471AP2/ERF domain
SMARTSM003801.8E-233194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-243189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MANLSHTSGQ LVPNILVDNK KSARTNTKHP IYRGIRCRSG KWVCEIREPR KTTRIWLGTY  60
PTPQTAAAAY DVAALALKGT QNIVLNFPHL VNSYPKLPPS PSPDNIRCAA ATAATMMAQR  120
GDDGRSSGSK TTAICNEEGS VESSLSENYA MQIGNTQMIT GEEEYVDEEE LFDFPSLLVN  180
MAEAMMLTPP RINSTSLEEY SPRDFDIENL WSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-104HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169381.11e-160PREDICTED: ethylene-responsive transcription factor ERF027-like
TrEMBLM1AXL11e-159M1AXL1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000325321e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.15e-30ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]