PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022160
Common NameLOC102585416
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 245aa    MW: 27498.9 Da    PI: 4.7479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022160genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-1850100256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr++  + +Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  PGSC0003DMP400022160  50 IYRGVRRRN-NSKWVCELREPSQ---QKRIWLGTYSTPEMAARAHDVAALALRGN 100
                           69****887.8*********954...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.83E-2949109No hitNo description
PfamPF008474.6E-134999IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2850109IPR001471AP2/ERF domain
PROSITE profilePS5103221.19350107IPR001471AP2/ERF domain
SMARTSM003801.1E-2850113IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2150109IPR016177DNA-binding domain
PRINTSPR003672.4E-75162IPR001471AP2/ERF domain
PRINTSPR003672.4E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNNDSSLYSS DLNPLSATIA SDEEGILLLA SSRPKKRAGR KKFKETRHPI YRGVRRRNNS  60
KWVCELREPS QQKRIWLGTY STPEMAARAH DVAALALRGN LATLNFADSR WRLPVPASKD  120
PKDIRQAAVI AAQAFSQDTE LVGIDGMIEE INSSTIDEIK YQEIDITRAN NGSSRDFGAK  180
ELCIDMENNL CCNWGEDNDM LEMEGWQEKM AEGLLFSPTP RLGSCFSWDD VESEVEVSLW  240
SYSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358387.10.0PREDICTED: dehydration-responsive element-binding protein 1E-like
TrEMBLM1AXP90.0M1AXP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000326210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-45C-repeat-binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]