PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022161
Common NameLOC102585755
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 239aa    MW: 26830.9 Da    PI: 4.8133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022161genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-1950101156
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           + y+GVr++  +++Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  PGSC0003DMP400022161  50 PVYRGVRRRN-NNKWVCELREPSQ---QKRIWLGTYPTPEMAARAHDVAALALRGN 101
                           68*****887.8*********954...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-1450100IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2151110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-2851110IPR001471AP2/ERF domain
PROSITE profilePS5103221.56251108IPR001471AP2/ERF domain
SMARTSM003802.3E-2751114IPR001471AP2/ERF domain
CDDcd000189.14E-2952110No hitNo description
PRINTSPR003672.9E-75263IPR001471AP2/ERF domain
PRINTSPR003672.9E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNNNSSLYSS DLNPLSATTP SDEEGLILLL ASSRPKKRAG RKKFKETRHP VYRGVRRRNN  60
NKWVCELREP SQQKRIWLGT YPTPEMAARA HDVAALALRG NLATLNFADS RWRLPVPASK  120
DPKDIRQAAV IAAQAFSQDT EVDYMNEEVN SNTTDEIDIA RVNNGSSSDF SAKELSMDME  180
NILSCNGGED NYMLETEGWR EKMAEELLFS PTPRLGSCFS WDDVETSDVE VSLWSYSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022161
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358388.11e-177PREDICTED: dehydration-responsive element-binding protein 1E-like
TrEMBLM1AXQ01e-176M1AXQ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000326221e-176(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.14e-45ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]