PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022163
Common NameLOC102586420
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 202aa    MW: 22053.5 Da    PI: 4.4899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022163genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-161866255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+++Aa+a++ a+++l+g
  PGSC0003DMP400022163 18 IYRGIR-CR-SGKWVCEIREPRK---TTRIWLGTYPTPQMAAAAYDVAALALKG 66
                          69***9.55.6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-101766IPR001471AP2/ERF domain
CDDcd000184.83E-131777No hitNo description
Gene3DG3DSA:3.30.730.101.4E-241876IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-161876IPR016177DNA-binding domain
PROSITE profilePS5103219.1771875IPR001471AP2/ERF domain
SMARTSM003807.2E-241881IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTDPSHATKS RTNTKHPIYR GIRCRSGKWV CEIREPRKTT RIWLGTYPTP QMAAAAYDVA  60
ALALKGTQNV VLNFPHLVDS YPKLPPSPSP ADIQRAAATA AGAMASLGDD DDRSLESRDG  120
AICNERGSTE FPSSSGNYDM QIGTQTTAGE EEYVDEEALF EFPSLLVNMA EAMMLSPPRI  180
NSFQSEDYSS GDFDAESLWS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022163
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-179HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358390.11e-150PREDICTED: ethylene-responsive transcription factor ERF027-like
TrEMBLM1AXQ21e-148M1AXQ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000326241e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-33ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]