PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022407
Common NameLOC102591492
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 253aa    MW: 29292 Da    PI: 5.6657
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022407genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd +lv+ +   G  +W+t+++  g+ R++k+c++rw +yl
  PGSC0003DMP400022407 14 RGPWTIEEDHKLVHFILNNGIQCWRTVPKLAGLQRCGKSCRLRWINYL 61
                          89********************************************97 PP
2Myb_DNA-binding521.7e-1667110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++
  PGSC0003DMP400022407  67 RGALSEAEEDQIIELHARLGNR-WSKIASYFP-GRTDNEIKNHWNT 110
                           78889*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.558961IPR017930Myb domain
SuperFamilySSF466891.65E-2811108IPR009057Homeodomain-like
SMARTSM007172.1E-61363IPR001005SANT/Myb domain
PfamPF002494.0E-121461IPR001005SANT/Myb domain
CDDcd001678.67E-51661No hitNo description
PROSITE profilePS5129426.10762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-2465116IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.8E-1567110IPR001005SANT/Myb domain
CDDcd001671.71E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRQPCCDRV GLKRGPWTIE EDHKLVHFIL NNGIQCWRTV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAL SEAEEDQIIE LHARLGNRWS KIASYFPGRT DNEIKNHWNT RIKKRLHLMG  120
IDPLTHQPID KEKYQHESDD KTELLSTITE TYDKRNETES FIENANDISL PNNMLSENIN  180
EELWNKSFKT MSTCYSPSIS LEAEESINFS TTSNVAAAPA EEEDSVQQWM DSIFSCAINQ  240
LEEDLFLLRK YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022407
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153766e-90AC215376.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0072B02, complete sequence.
GenBankAC2154646e-90AC215464.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0121H01, complete sequence.
GenBankAC2358016e-90AC235801.1 Solanum lycopersicum chromosome 3 clone C03HBa0140L21, complete sequence.
GenBankHG9755146e-90HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338652.10.0PREDICTED: myb-related protein 315-like
SwissprotP813945e-77MYB15_ANTMA; Myb-related protein 315
TrEMBLM1AYB90.0M1AYB9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000329300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.15e-82myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]