PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022480
Common NameLOC102583497
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25280.5 Da    PI: 5.5114
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022480genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-2059111456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           ++++++eq++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  PGSC0003DMP400022480  59 KRKLSEEQVNFLEQSFEDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 111
                           45899***********************************************9 PP
2HD-ZIP_I/II121.15.5e-3958149293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +kr+ls+eqv++LE+sFe e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L+e+
  PGSC0003DMP400022480  58 RKRKLSEEQVNFLEQSFEDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVEKCRLETEVLKLKEQ 146
                           8**************************************************************************************** PP

           HD-ZIP_I/II  91 lke 93 
                           l+e
  PGSC0003DMP400022480 147 LNE 149
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.21653113IPR001356Homeobox domain
SMARTSM003891.9E-2056117IPR001356Homeobox domain
CDDcd000862.78E-1758114No hitNo description
PfamPF000462.2E-1759111IPR001356Homeobox domain
SuperFamilySSF466893.55E-1859122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-2160120IPR009057Homeodomain-like
PRINTSPR000315.8E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000315.8E-693109IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNNHQIIEDD NMILISQYYP DIYTQLVPQQ GESKPRRRRR KKNKLGEGSG SDQMMMMRKR  60
KLSEEQVNFL EQSFEDEHKL ESERKDKLAA ELGLDPRQVA VWFQNRRARW KSKKLEEEYS  120
KLKSEHDNNV VEKCRLETEV LKLKEQLNES EKEIKRLLLE RCDGVSSNYT SPSASSFSME  180
APFLGEFGME ALDNVFYAQE NNYVQGLDWV NLYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541RRRRRKK
23960RKKNKLGEGSGSDQMMMMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022480
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260011e-143AC226001.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0116F10, complete sequence.
GenBankHG9755141e-143HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363140.11e-158PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU704e-76ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM1AYI11e-156M1AYI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000330361e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.13e-63homeobox protein 21
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]