PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022481
Common NameLOC102584482
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 546aa    MW: 60228.4 Da    PI: 5.6688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022481genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.12.1e-1011845442374
                  GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      +a +++++s+++++++++++k+fs++sP
  PGSC0003DMP400022481 184 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------SARQTRPSSSSDVIQTIKSYKIFSNISP 266
                           678*************************999************************......888999999999**************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                           i+ fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++
  PGSC0003DMP400022481 267 IPMFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPVLRITALVPEE--YAVESRLIRENLTQFARELNI 353
                           ********************************************877666689***********66..99999**************** PP

                  GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerfleal 261
                            fe+++++ +++e l+++++++ +gE++aV l+ +++r +          + +++ ++++sP+vvv+v++e  + +++ sF + +++ l
  PGSC0003DMP400022481 354 GFEIDFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNDLRRISPNVVVHVDSEglMGYGAMSFRQTVIDGL 433
                           **************************************98......3...48*******************87788************* PP

                  GRAS 262 eyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                           e+ys+l++sl +a+++  +  ++++k+E+++l ++iv+++ + g++        ++W+++++ aGF+pv ls++a  qa++ll +v+++
  PGSC0003DMP400022481 434 EFYSTLLESLeAANIGGGNcgDWMRKIENFVLFPKIVDMIGAVGRR-----GGGGSWKDAMMGAGFRPVGLSQFADFQADCLLGRVQVR 517
                           **********88999999999**********************998.....999*********************************** PP

                  GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                           g++v +++++++l+W+dr+Lv++SaWr
  PGSC0003DMP400022481 518 GFHVAKRQAEMLLCWHDRALVATSAWR 544
                           **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.136157524IPR005202Transcription factor GRAS
PfamPF035147.3E-99184544IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKVPFSTNDN VSSKPLISSN NNNLRNNVTF PAATNGSNLC YEPKSVLELR RSPSPIVDKQ  60
IITTNPDLSA LCGGGEDPLQ LGDHVLTNFE DWDSLMRELG LHDDSASLSK TNPPLSLTQS  120
ESLTQFHNLS EFSADSTQFA NPDFSFSEST FPQQFPAVNQ GSFINALDLS GDIHQNWNVG  180
FDYVDELIRF AECFETNAFQ LAHVILARLN QRLRSAAGKP LQRAAFYFKE ALQAQLAGSA  240
RQTRPSSSSD VIQTIKSYKI FSNISPIPMF SSFTANQAVL EAVDGSMLVH VIDFDIGLGG  300
HWASFMKELA DKAECRKANA PVLRITALVP EEYAVESRLI RENLTQFARE LNIGFEIDFV  360
LIRTFELLSF KAIKFMEGEK TAVLLSPAIF RRVGSGFVND LRRISPNVVV HVDSEGLMGY  420
GAMSFRQTVI DGLEFYSTLL ESLEAANIGG GNCGDWMRKI ENFVLFPKIV DMIGAVGRRG  480
GGGSWKDAMM GAGFRPVGLS QFADFQADCL LGRVQVRGFH VAKRQAEMLL CWHDRALVAT  540
SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2719154327378Protein SCARECROW
5b3h_A3e-2719154326377Protein SCARECROW
5b3h_D3e-2719154326377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5177940.0EF517794.1 Solanum bulbocastanum BAC 27I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363143.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-146SCL15_ARATH; Scarecrow-like protein 15
TrEMBLM1AYI20.0M1AYI2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000330370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-146GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]