PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022599
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 134aa    MW: 14457.7 Da    PI: 6.4872
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022599genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260797.7e-2527428100
                DUF260  28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                           ++fa+vhk+FGasn +kll ++p+++r +++ +l+yeA ar+rdPvyG+vg+i++lqqq  +l+aela+++++
  PGSC0003DMP400022599   2 AHFAAVHKVFGASNASKLLLTIPPNKRLETVVTLCYEALARVRDPVYGCVGHIFSLQQQAVTLQAELAYVQAR 74 
                           68*******************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.273175IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-23272IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAHFAAVHKV FGASNASKLL LTIPPNKRLE TVVTLCYEAL ARVRDPVYGC VGHIFSLQQQ  60
AVTLQAELAY VQARISTLQH HQHLPMPPPT PSQTDVAAAC CCNLASLVCT TMDPSIDITD  120
LCNVLDQQLD NSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2046840104LOB family transfactor Ramosa2.1
5ly0_B3e-2046840104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022599
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-74HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339769.11e-93PREDICTED: LOB domain-containing protein 19
SwissprotO813229e-38LBD31_ARATH; LOB domain-containing protein 31
TrEMBLM1AYS17e-93M1AYS1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000332211e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-37LOB domain-containing protein 19
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]