PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400022708

Common Name

LOC102598246

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 259aa MW: 29354.6 Da PI: 8.2054

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400022708	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2e-37	32	91	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCds+ntkfCyynnyslsqPr+fCk+C+ryWt+GG+lr vP+Gg++rknk+ PGSC0003DMP400022708 32 QQQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRHVPLGGSSRKNKNI 91 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.8E-33	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.286	36	90	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-24	36	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MLGESDEKNM KSNFMIMEKQ NIQDQPQQQP QQQQTLKCPR CDSSNTKFCY YNNYSLSQPR 60 HFCKSCKRYW TRGGTLRHVP LGGSSRKNKN IQKPNFVTSS TNLGPNFHEP QVVVDHTNPL 120 FNYGLSTNPF DPNIQFPRLF NFSRVFNNEN LGLGFSNEFK KIQDIVTSTN NSSSSLLSSY 180 PTFGSSLISS SSSNLTSLIA PTLHQQNFIT NNDKFQDSNY HELNQIEEMN YVNNPFLSWA 240 SDYVDPSNLG SSSLPSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400022708

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX022891	5e-38	JX022891.1 UNVERIFIED: Solanum lycopersicoides voucher UCD:TGRC LA2408 putative Dof zinc finger protein-like (Dof01) gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015162392.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	M1AZ23	0.0	M1AZ23_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400033382	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400022708
Entrez Gene	102598246

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]