PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022715
Common NameLOC102596847
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 231aa    MW: 23876 Da    PI: 9.0743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022715genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35e-202978255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g
  PGSC0003DMP400022715 29 HYRGVRKRP-WGRYAAEIRDP---GKKCRVWLGTFDTAEEAARAYDKAAREFRG 78
                          6********.**********8...557************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-312986IPR001471AP2/ERF domain
PfamPF008477.3E-142978IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-222987IPR016177DNA-binding domain
SMARTSM003803.4E-382992IPR001471AP2/ERF domain
PROSITE profilePS5103223.4852986IPR001471AP2/ERF domain
CDDcd000184.46E-332988No hitNo description
PRINTSPR003673.2E-113041IPR001471AP2/ERF domain
PRINTSPR003673.2E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAPKQKCTTA ATAVTVTTAV TAAAVKEVHY RGVRKRPWGR YAAEIRDPGK KCRVWLGTFD  60
TAEEAARAYD KAAREFRGVK AKTNFQIVMQ PEDVNRSPSQ TSTVESSSAA VAVAAAAVTV  120
TATAAAMVES VPLDLSLGSS SSVGIFSNGV GKFLFQNSPT GGITPPMYYL QGAGVIRNGG  180
GSGDGGAAAG GQSGMMKSES DSSTVIDFMG NDLKPKANFD LNLLPAPEDM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-212987261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-212987564ATERF1
3gcc_A6e-212987564ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022715
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343223.11e-169PREDICTED: ethylene-responsive transcription factor 8-like
TrEMBLM1AZ271e-167M1AZ27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000333911e-168(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.19e-26ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]