PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022959
Common NameLOC102589177
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 484aa    MW: 53101.5 Da    PI: 7.0027
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022959genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.3e-09195236546
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                           k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk
  PGSC0003DMP400022959 195 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQELK 236
                           7789*************************9888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-7189238No hitNo description
SMARTSM003384.1E-7191256IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.507193237IPR004827Basic-leucine zipper domain
CDDcd147083.39E-21195246No hitNo description
PfamPF001701.2E-6195236IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.61E-6195237No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
PfamPF141448.2E-30280353IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MQAFKAAAVT LNNNNSNSNS NSNMYCHSSY YLRGDEGSRL AARFADIGEL EQSTGFTQQD  60
AVDLSRTSVY GEMRPNNIGV VSCNNNNLHF GELNTSIGSS ETGVETGKFM LQKAQTGMVG  120
GGGVVGGGGG GMALGNVQHF ENWGDSGIAD HSQQTDTSTD VDTDERNHQG QGVQHGTLIA  180
VDSMDLSKVK LGDQKTLRRL AQNREAARKS RLRKKAYVQQ LENSRLKLSQ LEQELKRARQ  240
QGIFIANGYA GDQSISAGGN GALAFDMDYA RWLDEHQRLI SDLRSAVNSH RGDNELRHLV  300
DGVMSHYDEK FKLKSVGLKA DVFHMLSGMW KTPVERCFMW LGGFRSSELL KILGNHLEPF  360
TEQQLIGICN LQQSSQQAED ALSQGMEALQ QLLVDTLSST SLGPTGSGNV ADYMGQMAIA  420
MGQLATLESF LYQADLLRQR TLQQLHRILT TRQAARALLV ISDYMSRLRA LSSLWLARPK  480
DQL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2334941e-145AC233494.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH126H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362551.20.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ415581e-174HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLM1AZL10.0M1AZL1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000337410.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-133bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]