PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400022973
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 211aa    MW: 23748.3 Da    PI: 9.4076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400022973genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-1182126554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h  +Er+RR++i + f  L +l+P +      K++Ka+iLe A   I++L
  PGSC0003DMP400022973  82 HLLAERKRRKKISKLFVSLASLIPGL-----NKMDKASILEGAATLIRQL 126
                           7789*********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1375132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.34277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1281135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-982126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.84E-982126No hitNo description
SMARTSM003533.9E-1183132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MDDLALIFSQ HYNGETSRKQ LHKEEDEKAN SLACIISFNN NFENSLLIPK EEANNTISFS  60
NNNYIIGAKF GERRSGEQAH EHLLAERKRR KKISKLFVSL ASLIPGLNKM DKASILEGAA  120
TLIRQLGERA KQGDHQSTID MMKKSSLLPE VEVKSLEKEL LITILLYKNQ QKGNIDEILS  180
VIQRLHLTIK TTNFMPFGTT SMHITVIAQV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400022973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2334941e-171AC233494.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH126H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158516.11e-152PREDICTED: transcription factor bHLH18-like
TrEMBLM1AZM01e-151M1AZM0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000337571e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14501910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.12e-18bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]