PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023055
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21077.3 Da    PI: 9.9123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023055genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161563149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k++e+k  r+vtfskR+  ++KK +E S L++a+v v++fs++gk y y
  PGSC0003DMP400023055 15 KFVESKEARYVTFSKRKLSLFKKINEFSALTEANVVVLLFSPSGKPYSY 63
                          689******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-22766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.885767IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-21880IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-14929IPR002100Transcription factor, MADS-box
PfamPF003191.3E-181763IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MERKKGKGRQ KIELKFVESK EARYVTFSKR KLSLFKKINE FSALTEANVV VLLFSPSGKP  60
YSYGNTSIEK ITDKCFKWKL NNSHVVDQAE GDKSNIFQAF DDLAEELKIL NEIEKNRKMR  120
YKILYPDSEI PPDKQRLEQL VALKLRLDKM KKEAKSNVLA EQFKFDLNVV VEPNEGESSG  180
TH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-108HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159413.11e-124PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1AZT91e-129M1AZT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000338611e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-17AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]