PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400023258

Common Name

LOC102602337

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 839aa MW: 91600 Da PI: 6.188

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400023258	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.1e-29	431	482	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ PGSC0003DMP400023258 431 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 482 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	414	502	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-26	435	482	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.21E-22	735	822	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-24	738	820	No hit	No description
PROSITE profile	PS51745	20.399	738	820	IPR000270	PB1 domain
SMART	SM00666	1.2E-21	738	820	IPR000270	PB1 domain
Pfam	PF00564	6.3E-16	738	819	IPR000270	PB1 domain
CDD	cd06407	1.51E-30	739	819	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MLRALAMFKE SSAAGILAQV WIPMKNGDQY VLSTCEQPYL LDQVLSGYRE VSRKFTFDTE 60 IKPGAIPGLP GRVFSSRIPE WTSNVLYYKE AEYLRVQYAV DHEVRGSIAL PVFEDDACET 120 PCCAVLELVT MKEKPNFDLE MDNVCQALQA VNLRSIAPPR LHSQNLSNNQ RDALAEITDV 180 LLAVCHAHKL PLALTWIPCN VTEGEGDEPI RVRARGCNTS SNEKCVLCVE DTACYVSDKE 240 MQGFVHACKE HFLEEGEGIV GKALQSNHPF FYPDVKEYHI SEYPLVHHAR KFGLNAAVAI 300 RLRSTFTGND DYILEFFLPT SMKGSTEQQL LLNNLSGTMQ RICKSLRTVA DAELVGQGAK 360 FGLQDGSVPN LPPIALSRKN SQHSLDSNSN SVNGAPLGAC DSKSAGTHAD DSREQTMTGS 420 RRQIEKKRST AEKHVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN 480 KVNRSLKKIQ TVLESVQGVE GGLKFDPATG GLVPAGSIIQ DFNAQKSIFF PFKDVSVKNP 540 TSVFQDAAVP SSSGNDKENS VVKMEDFYAD GNQLSQSNHI NTSSFKEGNK SSIEVSGYCY 600 ESKLATLDAG SSGLASLNAM PLTDSGNASL GSFLTKEGCR RWGLNNDTLD NFDRHFTSRC 660 SYPMVVGGDV DSKMKGDNEM DGDGRVIEHN QASSSAMTDS SNGSGSGSMI NGSSSSSHSR 720 GAEKHSKVEV NCGDNGSTIT VKATYKEDTI RFKFDLSAGC FQLYEDVAKR FKLQTGTFQL 780 KYLDDEEEWV MLVNDADLHE CLEILEFGGG RTVKFLVRDT PCALGSSGSS NCFLASGS*

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MLRALAMFKE SSAAGILAQV WIPMKNGDQY VLSTCEQPYL LDQVLSGYRE VSRKFTFDTE  60
IKPGAIPGLP GRVFSSRIPE WTSNVLYYKE AEYLRVQYAV DHEVRGSIAL PVFEDDACET  120
PCCAVLELVT MKEKPNFDLE MDNVCQALQA VNLRSIAPPR LHSQNLSNNQ RDALAEITDV  180
LLAVCHAHKL PLALTWIPCN VTEGEGDEPI RVRARGCNTS SNEKCVLCVE DTACYVSDKE  240
MQGFVHACKE HFLEEGEGIV GKALQSNHPF FYPDVKEYHI SEYPLVHHAR KFGLNAAVAI  300
RLRSTFTGND DYILEFFLPT SMKGSTEQQL LLNNLSGTMQ RICKSLRTVA DAELVGQGAK  360
FGLQDGSVPN LPPIALSRKN SQHSLDSNSN SVNGAPLGAC DSKSAGTHAD DSREQTMTGS  420
RRQIEKKRST AEKHVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN  480
KVNRSLKKIQ TVLESVQGVE GGLKFDPATG GLVPAGSIIQ DFNAQKSIFF PFKDVSVKNP  540
TSVFQDAAVP SSSGNDKENS VVKMEDFYAD GNQLSQSNHI NTSSFKEGNK SSIEVSGYCY  600
ESKLATLDAG SSGLASLNAM PLTDSGNASL GSFLTKEGCR RWGLNNDTLD NFDRHFTSRC  660
SYPMVVGGDV DSKMKGDNEM DGDGRVIEHN QASSSAMTDS SNGSGSGSMI NGSSSSSHSR  720
GAEKHSKVEV NCGDNGSTIT VKATYKEDTI RFKFDLSAGC FQLYEDVAKR FKLQTGTFQL  780
KYLDDEEEWV MLVNDADLHE CLEILEFGGG RTVKFLVRDT PCALGSSGSS NCFLASGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400023258

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362300.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_006362301.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	M1B093	0.0	M1B093_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400034189	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400023258
Entrez Gene	102602337

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]