PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400023259

Common Name

LOC102602337

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 1003aa MW: 109359 Da PI: 5.4763

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400023259	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5.1e-29	595	646	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ PGSC0003DMP400023259 595 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 646 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	578	666	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-26	599	646	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.18E-22	899	986	No hit	No description
Pfam	PF00564	8.0E-16	902	983	IPR000270	PB1 domain
SMART	SM00666	1.2E-21	902	984	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.5E-24	902	984	No hit	No description
PROSITE profile	PS51745	20.399	902	984	IPR000270	PB1 domain
CDD	cd06407	1.15E-30	903	983	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MERGVDFWAS PKGQVEGVAS FDASSRSSNV DSFNNVMEIM NLDAYAGWCT SPSAAEHMIA 60 SYAAFSPINH MSQSYAPFEG MSYTEQNTGA FPPMDANMVA SNHDGGEKMM FGQNDDQLHF 120 MVDSVDGEDG LVAKKSRRSS QQSDGADIGN SMILRSPSQP LAERMLRALA MFKESSAAGI 180 LAQVWIPMKN GDQYVLSTCE QPYLLDQVLS GYREVSRKFT FDTEIKPGAI PGLPGRVFSS 240 RIPEWTSNVL YYKEAEYLRV QYAVDHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKPN 300 FDLEMDNVCQ ALQAVNLRSI APPRLHSQNL SNNQRDALAE ITDVLLAVCH AHKLPLALTW 360 IPCNVTEGEG DEPIRVRARG CNTSSNEKCV LCVEDTACYV SDKEMQGFVH ACKEHFLEEG 420 EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF 480 FLPTSMKGST EQQLLLNNLS GTMQRICKSL RTVADAELVG QGAKFGLQDG SVPNLPPIAL 540 SRKNSQHSLD SNSNSVNGAP LGACDSKSAG THADDSREQT MTGSRRQIEK KRSTAEKHVS 600 LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV 660 QGVEGGLKFD PATGGLVPAG SIIQDFNAQK SIFFPFKDVS VKNPTSVFQD AAVPSSSGND 720 KENSVVKMED FYADGNQLSQ SNHINTSSFK EGNKSSIEVS GYCYESKLAT LDAGSSGLAS 780 LNAMPLTDSG NASLGSFLTK EGCRRWGLNN DTLDNFDRHF TSRCSYPMVV GGDVDSKMKG 840 DNEMDGDGRV IEHNQASSSA MTDSSNGSGS GSMINGSSSS SHSRGAEKHS KVEVNCGDNG 900 STITVKATYK EDTIRFKFDL SAGCFQLYED VAKRFKLQTG TFQLKYLDDE EEWVMLVNDA 960 DLHECLEILE FGGGRTVKFL VRDTPCALGS SGSSNCFLAS GS*

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MERGVDFWAS PKGQVEGVAS FDASSRSSNV DSFNNVMEIM NLDAYAGWCT SPSAAEHMIA  60
SYAAFSPINH MSQSYAPFEG MSYTEQNTGA FPPMDANMVA SNHDGGEKMM FGQNDDQLHF  120
MVDSVDGEDG LVAKKSRRSS QQSDGADIGN SMILRSPSQP LAERMLRALA MFKESSAAGI  180
LAQVWIPMKN GDQYVLSTCE QPYLLDQVLS GYREVSRKFT FDTEIKPGAI PGLPGRVFSS  240
RIPEWTSNVL YYKEAEYLRV QYAVDHEVRG SIALPVFEDD ACETPCCAVL ELVTMKEKPN  300
FDLEMDNVCQ ALQAVNLRSI APPRLHSQNL SNNQRDALAE ITDVLLAVCH AHKLPLALTW  360
IPCNVTEGEG DEPIRVRARG CNTSSNEKCV LCVEDTACYV SDKEMQGFVH ACKEHFLEEG  420
EGIVGKALQS NHPFFYPDVK EYHISEYPLV HHARKFGLNA AVAIRLRSTF TGNDDYILEF  480
FLPTSMKGST EQQLLLNNLS GTMQRICKSL RTVADAELVG QGAKFGLQDG SVPNLPPIAL  540
SRKNSQHSLD SNSNSVNGAP LGACDSKSAG THADDSREQT MTGSRRQIEK KRSTAEKHVS  600
LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLESV  660
QGVEGGLKFD PATGGLVPAG SIIQDFNAQK SIFFPFKDVS VKNPTSVFQD AAVPSSSGND  720
KENSVVKMED FYADGNQLSQ SNHINTSSFK EGNKSSIEVS GYCYESKLAT LDAGSSGLAS  780
LNAMPLTDSG NASLGSFLTK EGCRRWGLNN DTLDNFDRHF TSRCSYPMVV GGDVDSKMKG  840
DNEMDGDGRV IEHNQASSSA MTDSSNGSGS GSMINGSSSS SHSRGAEKHS KVEVNCGDNG  900
STITVKATYK EDTIRFKFDL SAGCFQLYED VAKRFKLQTG TFQLKYLDDE EEWVMLVNDA  960
DLHECLEILE FGGGRTVKFL VRDTPCALGS SGSSNCFLAS GS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400023259

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975450	0.0	HG975450.1 Solanum pennellii chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362300.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_006362301.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	M1B093	0.0	M1B093_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400034189	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400023259
Entrez Gene	102602337

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]