PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023375
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 189aa    MW: 21484.1 Da    PI: 7.1641
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023375genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-098312347
                          -HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                          +W++Ia +++ gRt++++k++w+++
  PGSC0003DMP400023375  8 RWSLIAGRLP-GRTDNEIKNYWNTH 31
                          6*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.563136IPR017930Myb domain
CDDcd001673.90E-7332No hitNo description
SuperFamilySSF466891.79E-8441IPR009057Homeodomain-like
PfamPF002495.7E-7731IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-13833IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MFLFPYDRWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG IDPTTHRSIN DPTTIPKVTT  60
ITFAAAHENI KDIDQQDEMI NIKTEFIETS KESDNNEKIQ EKSSCLPDLN LELRISPPHH  120
QQHRHQRSSS LCFTCSLGIQ NSKDCSCGSE SNGNGWSNNI VSMNIMAGYD FLGLKTNGLL  180
DYRTLETK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366980.11e-131PREDICTED: myb-related protein 308-like
SwissprotP813932e-45MYB08_ANTMA; Myb-related protein 308
TrEMBLM1B0K41e-139M1B0K4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000343721e-130(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-37myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]