PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023526
Common NameLOC102600271
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 214aa    MW: 24888.4 Da    PI: 8.1969
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023526genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.78.5e-25101184186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           rW+k+ev+aL+ +r+ +++++ +g +k+  Weev++ + + g+ r++k+Ckekwen+nk+yk++ ++ k r +++ ++cpyf++l+
  PGSC0003DMP400023526 101 RWPKSEVQALVSVRTCLDHKFLKG-AKGSVWEEVADGLGKMGYIRTAKKCKEKWENINKYYKRTIDSGKTR-PKNYRSCPYFHELD 184
                           8**********************9.99******************************************98.888899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.09794157IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.7E-499156IPR009057Homeodomain-like
PfamPF138371.1E-19100186No hitNo description
CDDcd122031.13E-18100163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVKKLMDRQE QMHKQLIEML EKKEEERIIR EEAWKQQEVE RARRDVELRA EETSRNLALI  60
AFLENLLGED FQIPKSSEVT SVVKDEGEVH GDIRSDPCNR RWPKSEVQAL VSVRTCLDHK  120
FLKGAKGSVW EEVADGLGKM GYIRTAKKCK EKWENINKYY KRTIDSGKTR PKNYRSCPYF  180
HELDSLYKKG LLNQGAGNCV KIETENKNVD PEE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023526
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755230.0HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352450.11e-156PREDICTED: trihelix transcription factor GT-2
TrEMBLM1B1001e-155M1B100_SOLTU; Uncharacterized protein
TrEMBLM1B1011e-156M1B101_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000346071e-155(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.18e-41Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]