PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023688
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 192aa    MW: 21754.8 Da    PI: 9.949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023688genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.44.7e-0991333128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk..vePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +G rF+P+d++++ + L++ v+g+ ++ +++++ ++ y   ++P+ L   +v    +  + +F+++ k + +   ++      yWk   
  PGSC0003DMP400023688   9 RGWRFDPSDNDIL-NILENYVTGRANPPQSTFNFANFYGdiTNPSALFaVAVGDPANpTIKYFVNTVKDKIS--VTS--SLGFYWKRDN 92 
                           79**********9.88********977767777777775337*****7334433333355566665554332..222..23568***99 PP

                   NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +   ++++ +ge+ g kk++ ++ ++  ++ +  W+m ey+l
  PGSC0003DMP400023688  93 QLIGIINEvTGENRGFKKSIKLF-QKGVDSDELVWIMTEYSL 133
                           9999888879999**********.56666689********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.3217155IPR003441NAC domain
SuperFamilySSF1019412.88E-98153IPR003441NAC domain
PfamPF023651.1E-79133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEINWIPTRG WRFDPSDNDI LNILENYVTG RANPPQSTFN FANFYGDITN PSALFAVAVG  60
DPANPTIKYF VNTVKDKISV TSSLGFYWKR DNQLIGIINE VTGENRGFKK SIKLFQKGVD  120
SDELVWIMTE YSLNSNTPGV EEDLKNEVIC RVRRILTSNP KARPNNSKKP KPSNNKRRNM  180
KLADIDLQLK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1B1C21e-136M1B1C2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000348271e-137(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]