PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400023700

Common Name

LOC102596583

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 216aa MW: 23925.3 Da PI: 6.393

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400023700	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.2e-10	64	108	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K + a++L + +Y+k L PGSC0003DMP400023700 64 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 108 99*********************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.83E-11	57	113	No hit	No description
SuperFamily	SSF47459	4.58E-16	57	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.323	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-16	61	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-8	64	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-11	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDMGNLYPGL EHLQSHAVCL SVPQVHQVQP FQGHPTSSTT VTIPHQPAIR PMVRARRGQA 60 TDPHSIAERL RRERISERIK ALQELVPSCN KTDRAAMLDE ILDYVKFLRL QVKVLSMSRL 120 GGASAVAQLV ADIPLQSVEG DSCESRSNQH VWEKWSDSET EQEVAKLMEE DVGTAMQYLQ 180 SKSLCIMPVS LAALIYPTQQ TDNQSMVKPE PTAPS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	73	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400023700

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013231	0.0	BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356051.2	1e-159	PREDICTED: transcription factor UNE12-like
Refseq	XP_015168141.1	1e-159	PREDICTED: transcription factor UNE12-like
Swissprot	O22768	6e-74	UNE12_ARATH; Transcription factor UNE12
TrEMBL	M1B1D0	1e-157	M1B1D0_SOLTU; Uncharacterized protein
TrEMBL	M1B1D4	1e-158	M1B1D4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400034840	1e-158	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	4e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400023700
Entrez Gene	102596583

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]