PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400023827
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 124aa    MW: 14325 Da    PI: 6.2219
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400023827genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB40.75.9e-132445395
                 NF-YB 53 kcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                          +++r++r+ti+ +d+ w ++++ f+dy epl++yl++yre +g
  PGSC0003DMP400023827  2 RSKRKQRNTITIEDVHWVMSKFRFDDYTEPLTLYLHHYREDDG 44
                          6799***********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-10249IPR009072Histone-fold
SuperFamilySSF471135.5E-8346IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MRSKRKQRNT ITIEDVHWVM SKFRFDDYTE PLTLYLHHYR EDDGGEHGSL REKYFLKRPM  60
VDADLGCNIM PYHLPPNFPM AHHHFVYPPP MENGNMHGDA SNGSTSQYAV DSDVEFPAEG  120
VKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
117RSKRKQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400023827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356441.22e-58PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168329.12e-58PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168330.12e-58PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_015168331.12e-58PREDICTED: nuclear transcription factor Y subunit B-4-like
TrEMBLM1B1Q03e-88M1B1Q0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000350285e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-16nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]