PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024048
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 189aa    MW: 21773.9 Da    PI: 9.058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024048genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444.1e-141095199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                          ffk l     +k+g l +p  f+ ++ +g+   +++  +  ++g++W  k+   + +++   ++GW eFv++ +L+ gD+++F+++g++ef
  PGSC0003DMP400024048 10 FFKPL--QPGFKNG-LKIPIGFL-KYlKGN--DQIEHAILRRDGNKWPTKV---NDPRS---EAGWAEFVQQYDLQLGDILMFRHEGNMEF 88
                          67777..6677777.********.554766..567899999**********...33333...79**********************99999 PP

                          ..EEEEE-S CS
                    B3 91 elvvkvfrk 99
                             v++f++
  PGSC0003DMP400024048 89 --EVSIFDS 95
                          ..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-19397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-195102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.785796IPR003340B3 DNA binding domain
CDDcd100178.93E-15894No hitNo description
SMARTSM010195.8E-131096IPR003340B3 DNA binding domain
PfamPF023622.6E-111195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKIPPKKPHF FKPLQPGFKN GLKIPIGFLK YLKGNDQIEH AILRRDGNKW PTKVNDPRSE  60
AGWAEFVQQY DLQLGDILMF RHEGNMEFEV SIFDSTHCDR EYAEYMQEGG GGGGAHTEDA  120
TERPMMRMIK SSTKASSPVK TATHHKSFGH FECIIREYCI RRGYLVSFKT HYFLQTLQVN  180
VFHNQVTY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754474e-72HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167204.11e-121PREDICTED: B3 domain-containing protein REM7-like isoform X1
TrEMBLM1B2681e-141M1B268_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000353651e-121(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-17B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]