PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024049
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 310aa    MW: 36098.9 Da    PI: 9.2691
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024049genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.2e-131095199
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                          ffk l     +k+g l +p  f+ ++ +g+   +++  +  ++g++W  k+   + +++   ++GW eFv++ +L+ gD+++F+++g++ef
  PGSC0003DMP400024049 10 FFKPL--QPGFKNG-LKIPIGFL-KYlKGN--DQIEHAILRRDGNKWPTKV---NDPRS---EAGWAEFVQQYDLQLGDILMFRHEGNMEF 88
                          67777..6677777.********.554766..567899999**********...33333...79**********************99999 PP

                          ..EEEEE-S CS
                    B3 91 elvvkvfrk 99
                             v++f++
  PGSC0003DMP400024049 89 --EVSIFDS 95
                          ..9999986 PP
2B351.71.5e-16154235588
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            ++++  ++g l+lp++fa ++g+++++  +l+++de+ r W++kl+ +   ++y+++ GW +F  +n L+ gD ++F+++ + 
  PGSC0003DMP400024049 154 IIREYCIRRGYLYLPRRFAIANGLINKK-CDLIIRDERQRLWNFKLS-SSITQTYIIGCGWTKFFADNCLRKGDRIMFEVVTNG 235
                           567888999*************988654.59***************4.555567*************************87643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-19397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-185102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.785796IPR003340B3 DNA binding domain
CDDcd100171.30E-13894No hitNo description
SMARTSM010195.8E-131096IPR003340B3 DNA binding domain
PfamPF023627.4E-111295IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-18150245IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.393150245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-17150243IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.3E-12151245IPR003340B3 DNA binding domain
CDDcd100175.79E-14154230No hitNo description
PfamPF023624.2E-14156237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKIPPKKPHF FKPLQPGFKN GLKIPIGFLK YLKGNDQIEH AILRRDGNKW PTKVNDPRSE  60
AGWAEFVQQY DLQLGDILMF RHEGNMEFEV SIFDSTHCDR EYAEYMQEGG GGGGAHTEDA  120
TERPMMRMIK SSTKASSPVK TATHHKSFGH FECIIREYCI RRGYLYLPRR FAIANGLINK  180
KCDLIIRDER QRLWNFKLSS SITQTYIIGC GWTKFFADNC LRKGDRIMFE VVTNGETPIW  240
KFQVTNREAP LLKFQGMFIL IEPISYFFDD LYSLSYLCII LRCLYKYTSW ITFYMLPKVC  300
KLSSFTLFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-102HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167204.10.0PREDICTED: B3 domain-containing protein REM7-like isoform X1
TrEMBLM1B2690.0M1B269_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000353650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-28B3 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]