PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024050
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 225aa    MW: 26216.5 Da    PI: 8.6097
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024050genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.9e-1769150588
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            ++++  ++g l+lp++fa ++g+++++  +l+++de+ r W++kl+ +   ++y+++ GW +F  +n L+ gD ++F+++ + 
  PGSC0003DMP400024050  69 IIREYCIRRGYLYLPRRFAIANGLINKK-CDLIIRDERQRLWNFKLS-SSITQTYIIGCGWTKFFADNCLRKGDRIMFEVVTNG 150
                           567888999*************988654.59***************4.555567*************************87643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-1765158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1865160IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.39365160IPR003340B3 DNA binding domain
SMARTSM010192.3E-1266160IPR003340B3 DNA binding domain
CDDcd100171.75E-1469145No hitNo description
PfamPF023622.1E-1470152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEFEVSIFDS THCDREYAEY MQEGGGGGGA HTEDATERPM MRMIKSSTKA SSPVKTATHH  60
KSFGHFECII REYCIRRGYL YLPRRFAIAN GLINKKCDLI IRDERQRLWN FKLSSSITQT  120
YIIGCGWTKF FADNCLRKGD RIMFEVVTNG ETPIWKFQVT NREAPLLKFQ GMFILIEPIS  180
YFFDDLYSLS YLCIILRCLY KYTSWITFYM LPKVCKLSSF TLFT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-102HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-102HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167204.11e-116PREDICTED: B3 domain-containing protein REM7-like isoform X1
TrEMBLM1B2701e-167M1B270_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000353651e-167(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-09DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]