PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024091
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 172aa    MW: 19447.3 Da    PI: 10.3003
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024091genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK37.25.9e-121371652
                RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                          ++++dAAk+L v+  +LKri   yGI RWPh k +++
  PGSC0003DMP400024091  1 MTLEDAAKDLHVSRATLKRIRKVYGITRWPHHKTRKI 37
                          679****************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS515199.591158IPR003035RWP-RK domain
PfamPF020421.5E-12137IPR003035RWP-RK domain
SuperFamilySSF542773.27E-1677167No hitNo description
SMARTSM006665.0E-1586168IPR000270PB1 domain
PROSITE profilePS5174520.11786168IPR000270PB1 domain
PfamPF005642.8E-1687167IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.2E-1688167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTLEDAAKDL HVSRATLKRI RKVYGITRWP HHKTRKINVH VSQGISFQGA EPYVVDQQCV  60
ALSQEKGTDY LGNKRSPATG VSCDSGMTLK VTYRGDIIKF QLSLSSTRVE LEGEVEKRLN  120
ISLQRFSIKY RDEDNEWILI TTDSNLRDGM HSLRLLGRTT MRLRVTPKAA T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024091
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316650.0AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168303.11e-100PREDICTED: protein NLP7-like
TrEMBLM1B2871e-124M1B287_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354321e-125(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10406515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.17e-15NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]