PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400024095

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 814aa MW: 92337.1 Da PI: 5.5689

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400024095	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	37.1	6.1e-12	586	681	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLg...............................................vclTvLKriCRqyGIkRWP 45 i+ e+l++++ +kdAAk+Lg v+ +LKriCR y I RWP PGSC0003DMP400024095 586 GITRETLEQQYGTLLKDAAKNLGgkftnfsafeirnsfcviiydvrsyafnrndlcigslksllwtsfiaVSRATLKRICRVYEITRWP 674 699************************************************************************************** PP RWP-RK 46 hRkiksl 52 k +++ PGSC0003DMP400024095 675 NHKTRKV 681 *999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	7.4E-12	587	681	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-17	721	809	No hit	No description
SMART	SM00666	3.4E-13	730	810	IPR000270	PB1 domain
PROSITE profile	PS51745	20.035	730	802	IPR000270	PB1 domain
Pfam	PF00564	3.4E-15	731	809	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.2E-16	732	808	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence Send to blast
MEHQPSEVCD LMPCKLDWCQ LKLNGWVFWS IKHNDELEYQ RSINSIFSYS VVSSIFPTEK 60 WRIQSVMEKI MWNPNISLFQ FWAPIKVNGS TFLSTADQPF AFYNQLDKRL SSYRKLCLDT 120 MIPMDNKEIP FGPPGRVFSR YLPEYNPNVL SYSSAEFPLL QTAIPLGIHS YYAFPVSNLH 180 DGQCLGVFEI VSTLPYLPLH TLIKWLNFES VGLYIPNSLG MPFGPSKRLD DERLGDIKAG 240 LYEILERHSL PFAQIWIPFS LPSSLKVLYR VGGSINERAQ SMYYEFEYSS EVCFIKSGEA 300 LVGRAFASQG SCFCKDVTLL SINEYPVLPT ARKARFTHSF AICLQSKCAN NFVCVVEYFL 360 PSNEMAVRDT KTFLNMLLTT MKELLPGFIV ASGNELGQRM LVEVVKVSPN DELDSFEIGQ 420 TLPSVQSLQD GGETIAIDSF YQESDFMKKL VDALALVISS CSLDKCDSLN CEGTVEVDPS 480 LPHPIEEAVT NRGTVNVDVA HDDHIEDTSE MMQLDSHFEQ PNLEINSVGA RSNDTVEHRD 540 FSYARQSVEA EAINRENNFV SGAMTNNEKI HSQKNNELRR IEKDHGITRE TLEQQYGTLL 600 KDAAKNLGGK FTNFSAFEIR NSFCVIIYDV RSYAFNRNDL CIGSLKSLLW TSFIAVSRAT 660 LKRICRVYEI TRWPNHKTRK VNVHVSHGVS FQGAEPYVGD QQCPALSQEK GIKYLGNKRS 720 PATGVSRDGV MTLKVTYRAD MIKFQLSLLS TRVELEGEVE KRFKISRFSI KYQDEDDDWI 780 LITSDSDLRD GMNSLRLLGR NTMRLEVNPE SDT*

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence Send to blast

MEHQPSEVCD LMPCKLDWCQ LKLNGWVFWS IKHNDELEYQ RSINSIFSYS VVSSIFPTEK  60
WRIQSVMEKI MWNPNISLFQ FWAPIKVNGS TFLSTADQPF AFYNQLDKRL SSYRKLCLDT  120
MIPMDNKEIP FGPPGRVFSR YLPEYNPNVL SYSSAEFPLL QTAIPLGIHS YYAFPVSNLH  180
DGQCLGVFEI VSTLPYLPLH TLIKWLNFES VGLYIPNSLG MPFGPSKRLD DERLGDIKAG  240
LYEILERHSL PFAQIWIPFS LPSSLKVLYR VGGSINERAQ SMYYEFEYSS EVCFIKSGEA  300
LVGRAFASQG SCFCKDVTLL SINEYPVLPT ARKARFTHSF AICLQSKCAN NFVCVVEYFL  360
PSNEMAVRDT KTFLNMLLTT MKELLPGFIV ASGNELGQRM LVEVVKVSPN DELDSFEIGQ  420
TLPSVQSLQD GGETIAIDSF YQESDFMKKL VDALALVISS CSLDKCDSLN CEGTVEVDPS  480
LPHPIEEAVT NRGTVNVDVA HDDHIEDTSE MMQLDSHFEQ PNLEINSVGA RSNDTVEHRD  540
FSYARQSVEA EAINRENNFV SGAMTNNEKI HSQKNNELRR IEKDHGITRE TLEQQYGTLL  600
KDAAKNLGGK FTNFSAFEIR NSFCVIIYDV RSYAFNRNDL CIGSLKSLLW TSFIAVSRAT  660
LKRICRVYEI TRWPNHKTRK VNVHVSHGVS FQGAEPYVGD QQCPALSQEK GIKYLGNKRS  720
PATGVSRDGV MTLKVTYRAD MIKFQLSLLS TRVELEGEVE KRFKISRFSI KYQDEDDDWI  780
LITSDSDLRD GMNSLRLLGR NTMRLEVNPE SDT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400024095

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC231665	0.0	AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006354235.1	0.0	PREDICTED: protein NLP6-like isoform X1
TrEMBL	M1B291	0.0	M1B291_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400035438	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10406	5	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-40	NIN like protein 7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400024095

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]