PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024096
Common NameLOC102578341
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 701aa    MW: 79035.8 Da    PI: 5.356
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024096genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK51.32.3e-16520568452
                RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            i+ e+l++++   +kdAAk+Lgv+  +LKriCR y I RWP  k +++
  PGSC0003DMP400024096 520 GITRETLEQQYGTLLKDAAKNLGVSRATLKRICRVYEITRWPNHKTRKV 568
                           699****************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.456507589IPR003035RWP-RK domain
PfamPF020427.4E-16521568IPR003035RWP-RK domain
SuperFamilySSF542773.01E-17608696No hitNo description
PROSITE profilePS5174520.035617689IPR000270PB1 domain
SMARTSM006663.4E-13617697IPR000270PB1 domain
PfamPF005642.8E-15618696IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.8E-16619695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MEKIMWNPNI SLFQFWAPIK VNGSTFLSTA DQPFAFYNQL DKRLSSYRKL CLDTMIPMDN  60
KEIPFGPPGR VFSRYLPEYN PNVLSYSSAE FPLLQTAIPL GIHSYYAFPV SNLHDGQCLG  120
VFEIVSTLPY LPLHTLIKWL NFESVGLYIP NSLGMPFGPS KRLDDERLGD IKAGLYEILE  180
RHSLPFAQIW IPFSLPSSLK VLYRVGGSIN ERAQSMYYEF EYSSEVCFIK SGEALVGRAF  240
ASQGSCFCKD VTLLSINEYP VLPTARKARF THSFAICLQS KCANNFVCVV EYFLPSNEMA  300
VRDTKTFLNM LLTTMKELLP GFIVASGNEL GQRMLVEVVK VSPNDELDSF EIGQTLPSVQ  360
SLQDGGETIA IDSFYQESDF MKKLVDALAL VISSCSLDKC DSLNCEGTVE VDPSLPHPIE  420
EAVTNRGTVN VDVAHDDHIE DTSEMMQLDS HFEQPNLEIN SVGARSNDTV EHRDFSYARQ  480
SVEAEAINRE NNFVSGAMTN NEKIHSQKNN ELRRIEKDHG ITRETLEQQY GTLLKDAAKN  540
LGVSRATLKR ICRVYEITRW PNHKTRKVNV HVSHGVSFQG AEPYVGDQQC PALSQEKGIK  600
YLGNKRSPAT GVSRDGVMTL KVTYRADMIK FQLSLLSTRV ELEGEVEKRF KISRFSIKYQ  660
DEDDDWILIT SDSDLRDGMN SLRLLGRNTM RLEVNPESDT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167189.10.0PREDICTED: protein NLP6-like isoform X3
TrEMBLM1B2920.0M1B292_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354380.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.13e-41NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]