PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024097
Common NameLOC107061823
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 253aa    MW: 28755.6 Da    PI: 8.1924
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024097genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK34.93e-11172210543
                RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkR 43 
                           i+ + l++++ ++++dAAk+L ++  +LKriCR++ I+R
  PGSC0003DMP400024097 172 ITRKILEEHYGMTLQDAAKNLRISRATLKRICRENEIAR 210
                           89999********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020425.9E-12172210IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MYHEFEYSSE VCLIESRKAL VGRAFASQGS CFCKDVTLLS IEEYPLVPGA QKARFTQSFA  60
ICLQSKCANK FICVVEYFLP PNEMVVRDTK IFLNMLLSTM KEQYLGFIVA PGNELGQRML  120
VEVLKDSPSD ELDSFEIGQT LLSVQSLQDG GETTEVGQRL SSVQRIEKDY GITRKILEEH  180
YGMTLQDAAK NLRISRATLK RICRENEIAR CQITRLERLM SMLAKAYLFK MLNHMWAINN  240
VLLFPKKKAP NI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024097
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316651e-165AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167194.10.0PREDICTED: protein NLP7-like
RefseqXP_015167195.10.0PREDICTED: protein NLP7-like
TrEMBLM1B2930.0M1B293_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10406515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.16e-23Nin-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]