PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024100
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 742aa    MW: 83727.3 Da    PI: 5.9577
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024100genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK47.73.1e-15564610551
                RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                           i+ + l+++F  +++dAAk+L v++ +LKriC +y I RWP  k ++
  PGSC0003DMP400024100 564 ITRKILEQHFGRTLQDAAKNLHVSQATLKRICKEYKITRWPNYKTRK 610
                           89999************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.138545632IPR003035RWP-RK domain
PfamPF020423.2E-16564610IPR003035RWP-RK domain
SuperFamilySSF542771.08E-13655725No hitNo description
SMARTSM006661.7E-8660732IPR000270PB1 domain
PROSITE profilePS5174520.635660734IPR000270PB1 domain
PfamPF005641.1E-12661729IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.2E-13662725No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MEHSPSDVCS QMPCQLESNA WAFSSRKYKD ELGYQRTIMS SASVVSMFPT VKWRIQSVME  60
KMSTPNICLV QFWAPIKVNG STFLSTADQT FGFYKGIDKR LSSYRKLCLD TLIPIDDYTE  120
IRFGPIERVY TRCLPEYNPD VSSYSAAEFP LLELAIRLGI HSYYAVPVFN NYDQQYRGVL  180
EIVSTQPSLH LSHLITGSKI YSFQLHSICN SRDMLFGLLE PPVDDRLDEI KNELYEILER  240
DSLPFAQIWI PYSPSVSLKV LYRAAASIYE RSSSMYHEFE HVSEVCFIES GAALVGRAFA  300
SQGSCFCKDV TLLSISEYPL VLSARKVRFT QSFAICLQSK CADNSVYVVE YFLPPNKMSA  360
RDTRTFINML LSTTKERLPG FVVAPGKELG QRMLVEVVKV SPSDEFDSFE IGQSLPSVES  420
LQDGGGTTEF GQRLLSVQSL QDVGETTEID SFCQQSNNVV AAAALLVPSC SADKRDSLNC  480
ERTVEVDLLL PHPIEEAVTN SGKVNLDVAH DDHIEDTLEI MQLDSHFEQP NIEINSAGNA  540
MTNNNKIHSH KKSTIQRIEK DYGITRKILE QHFGRTLQDA AKNLHVSQAT LKRICKEYKI  600
TRWPNYKTRK ANVHVSQGVS FQVAEPYVVN QQCPALSQEK GIDYLGHKIS PAIGKPCDGV  660
MTVKVTYKGD IIKFQLSLSS TRVELEGEVE KRLKISLERF SIKYQDEGDD WILISTDSDL  720
RDRMHSLRLL GKDYYEITGY P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316650.0AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354239.10.0PREDICTED: protein NLP7-like
RefseqXP_006354240.10.0PREDICTED: protein NLP7-like
TrEMBLM1B2960.0M1B296_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000354440.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.12e-39NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]