PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024332
Common NameLOC107063451
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARR-B
Protein Properties Length: 218aa    MW: 24436.9 Da    PI: 7.1981
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024332genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like231.8e-07189212124
               G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                           k r++Wt  LH++Fve+v++LG +
  PGSC0003DMP400024332 189 KSRVVWTDPLHDKFVEVVSKLGMK 212
                           68*******************855 PP
2Response_reg56.12e-19151202107
                           EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
          Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                           l+vd + + + + +++l+k+++ ev +++++++al  l+ +   +Dl+++ + mp+m+G++l +ei++e   +p+ +++a ++e+++ +
  PGSC0003DMP400024332  15 LVVDVDVTCLLITATFLKKSKF-EVVTVKSAKDALGVLRGSGlsFDLVVTEVHMPKMNGFQLQQEIAKEF-IIPVAFLSADEKESTIMK 101
                           7888899999999*********.***************888888**********************9988.9***************** PP

                           HHHTTESEEEESS--HHHH CS
          Response_reg  89 alkaGakdflsKpfdpeel 107
                            l+ G+  f  Kp++++++
  PGSC0003DMP400024332 102 GLESGVILFMGKPISQNNI 120
                           **************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.5E-2512150No hitNo description
SMARTSM004488.1E-1512124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.6513128IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521727.68E-2213128IPR011006CheY-like superfamily
PfamPF000722.8E-1615120IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.82E-1915120No hitNo description
Gene3DG3DSA:1.10.10.601.5E-6187213IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEEQNNQLFE IIRCLVVDVD VTCLLITATF LKKSKFEVVT VKSAKDALGV LRGSGLSFDL  60
VVTEVHMPKM NGFQLQQEIA KEFIIPVAFL SADEKESTIM KGLESGVILF MGKPISQNNI  120
NYLWNYATVG KNHKGKHVIN QQNQDNTNER IPHEVIHIES SSSNSERDKS MRKCEETESE  180
QSSSPPSKKS RVVWTDPLHD KFVEVVSKLG MKSKSSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-139HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170840.11e-160PREDICTED: two-component response regulator ORR26-like
TrEMBLM1B2U41e-159M1B2U4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000357881e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-22response regulator 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]