PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400024431

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 184aa MW: 20727.3 Da PI: 5.7493

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400024431	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.6	8.9e-16	14	83	1	46
TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqk 46 rg W++eEde+l++ + +G++ W+ Ia++++ gRt++++k++w++ PGSC0003DMP400024431 14 RGQWSPEEDEILKNHIFNHGNPgswitlpkragsvslplifynfisyLWSVIASKLP-GRTDNEIKNYWNS 83 89*****************************************************.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-21	5	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.778	9	89	IPR017930	Myb domain
SMART	SM00717	1.6E-9	13	87	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-12	14	83	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.84E-12	14	86	IPR009057	Homeodomain-like
CDD	cd00167	1.78E-8	17	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MVRAPCCDKT KVKRGQWSPE EDEILKNHIF NHGNPGSWIT LPKRAGSVSL PLIFYNFISY 60 LWSVIASKLP GRTDNEIKNY WNSKLKKKLS ARKEAMKLPI PSSDSADKNM VETVEKNPRF 120 TNQEEDHSKS SPSIEGSMSF GTCSSPLDDV AWFESFFPMD SNSSDGIWST QQEEIDDFPS 180 TLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269\|PubMed:26124109, ECO:0000269\|PubMed:26371322}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400024431

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269\|PubMed:24517883, ECO:0000269\|PubMed:26371322}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009286	1e-149	AP009286.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0239G21, complete sequence.
GenBank	HG975520	1e-149	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355307.1	1e-116	PREDICTED: transcription factor RAX3-like
Swissprot	Q9FKL2	1e-26	MYB36_ARATH; Transcription factor MYB36
TrEMBL	M1B321	1e-132	M1B321_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400035941	1e-133	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15590	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-29	myb domain protein 36

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400024431

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Fernández-Marcos M, et al. Control of Arabidopsis lateral root primordium boundaries by MYB36. New Phytol., 2017. 213(1): p. 105-112 [PMID:27891649]