PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024503
Common NameERF1
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 191aa    MW: 21065.6 Da    PI: 8.7554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024503genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-192576156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++y+GVr ++ +gr+ AeIrdp++   ++r +lg+f+tae+Aa+a++ a+++++g+
  PGSC0003DMP400024503 25 PRYRGVRKRP-WGRFSAEIRDPVK---KARKWLGTFDTAEGAARAYDTAARSFHGA 76
                          68********.**********654...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-292585No hitNo description
PfamPF008473.4E-112575IPR001471AP2/ERF domain
PROSITE profilePS5103223.5382683IPR001471AP2/ERF domain
SMARTSM003809.6E-342689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-302683IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-212684IPR016177DNA-binding domain
PRINTSPR003675.8E-102738IPR001471AP2/ERF domain
PRINTSPR003675.8E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MPRRKNPDTN GSRSVVFRQS EIDPPRYRGV RKRPWGRFSA EIRDPVKKAR KWLGTFDTAE  60
GAARAYDTAA RSFHGAKAKT NFPILPPYGE NQFENLQQSR PASSSMSSTV ESSSDARALC  120
KIMQPRIEIP RRIPMGEGHS DCDSSSSVVD GNCIGGGDDQ TSSFCKDPLP FDLNFPPPSD  180
DFHIIAPLCF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-192790670ATERF1
3gcc_A2e-192790670ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024503
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258600.0JN125860.1 Solanum tuberosum ethylene response factor ERF1 (ERF1) mRNA, complete cds.
GenBankJX4287980.0JX428798.1 Solanum tuberosum transposase-related c2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275619.11e-139ethylene-responsive transcription factor 7-like
TrEMBLA0A0V0HP811e-138A0A0V0HP81_SOLCH; Putative ethylene-responsive transcription factor 7-like
TrEMBLG3K5121e-138G3K512_SOLTU; Ethylene response factor ERF1
STRINGPGSC0003DMT4000360711e-138(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14369912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.18e-30ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]