PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024800
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 131aa    MW: 15226.3 Da    PI: 6.5074
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024800genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.16.8e-213125246374
                  GRAS 246 adhns.esFlerflealeyysalfdsleakl.preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                           +++ns ++F +rf++ +ey ++++ds+++ + +res+ r+++     + e+ +++++ g++    +et+ekW er++++GF    ++++
  PGSC0003DMP400024800   3 CSCNScGDFTTRFSRRVEYLWKFLDSTSVAYkGRESDGRRMM-----EGEAAKALTNMGEM----NETKEKWCERMRTVGFVWKMFGDD 82 
                           66644269*******************777514444555555.....55689999999998....99********************** PP

                  GRAS 333 aakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           a + a++ll+k++ ++++rv+e++g++ l Wk+ p+ ++S W+
  PGSC0003DMP400024800  83 AIDRARALLKKYDnNWEMRVDEKDGCVGLWWKGDPVSFCSLWK 125
                           *************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.8021104IPR005202Transcription factor GRAS
PfamPF035142.3E-183125IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDCSCNSCGD FTTRFSRRVE YLWKFLDSTS VAYKGRESDG RRMMEGEAAK ALTNMGEMNE  60
TKEKWCERMR TVGFVWKMFG DDAIDRARAL LKKYDNNWEM RVDEKDGCVG LWWKGDPVSF  120
CSLWKIDPNT *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024800
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361338.12e-94PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC85e-63NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A3Q7J9R16e-89A0A3Q7J9R1_SOLLC; Uncharacterized protein
TrEMBLM1B3V21e-90M1B3V2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000365772e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.14e-48GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  3. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]