PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024831
Common NameLOC102600539
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 223aa    MW: 24437.1 Da    PI: 9.8395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024831genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000175779123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C++C + F ++  L  H++ H
  PGSC0003DMP400024831 57 FSCNYCQRKFYSSQALGGHQNAH 79
                          89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-65484No hitNo description
PROSITE profilePS5015711.4275784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEVKASNNNQ ISNDEHENDH LILDLSLDHG VKSNIQTSSS DASRSAGYNN ESEPRVFSCN  60
YCQRKFYSSQ ALGGHQNAHK RERTIAKRSQ KMSAAAFGYD NKYSSMASLP LHGSFNRSLG  120
IQVHSMIHKP TSSTAFGVPA LYGHPGWSIR RPIGRLAPEN NYHVAGTTSS GGAAARFDNI  180
IQKFPQVDGI SQYRWDSGGG PTHSKSTNKP DEMKKLDLSL RL*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024831
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2392920.0AC239292.1 Solanum tuberosum strain Diploid genotype RH89-039-16 chromosome 9 clone RH023B19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341365.11e-167PREDICTED: zinc finger protein 1
SwissprotQ424852e-35ZFP1_ARATH; Zinc finger protein 1
TrEMBLM1B3Y01e-165M1B3Y0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000366281e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-36C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]