PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024937
Common NameLOC102586108
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-X1
Protein Properties Length: 763aa    MW: 81733 Da    PI: 7.9012
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024937genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.5e-052643118
              zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
                          CG+H C +lCH+GpC+ C
  PGSC0003DMP400024937 26 CGNHICRELCHPGPCGDC 43
                          ****************99 PP
2zf-NF-X122.13.4e-0784101118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG H+C++ CH G+C pC
  PGSC0003DMP400024937  84 CGVHRCEAVCHSGDCAPC 101
                           ****************** PP
3zf-NF-X119.22.7e-06180198119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C++lCH G CppC 
  PGSC0003DMP400024937 180 CGQHSCESLCHSGHCPPCL 198
                           ******************6 PP
4zf-NF-X118.73.8e-06290305116
              zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                           CG H C ++CH+ pC+
  PGSC0003DMP400024937 290 CGLHACARTCHPSPCD 305
                           ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.21E-91661No hitNo description
PfamPF014222.1E-42643IPR000967Zinc finger, NF-X1-type
SMARTSM004380.00142645IPR000967Zinc finger, NF-X1-type
CDDcd060084.17E-1474122No hitNo description
PfamPF014221.7E-684101IPR000967Zinc finger, NF-X1-type
SMARTSM004385.6E-584103IPR000967Zinc finger, NF-X1-type
PfamPF0142212142153IPR000967Zinc finger, NF-X1-type
SMARTSM00438200142176IPR000967Zinc finger, NF-X1-type
CDDcd060081.71E-9170222No hitNo description
PfamPF014226.5E-5180197IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4180199IPR000967Zinc finger, NF-X1-type
CDDcd060089.97E-5227275No hitNo description
SMARTSM004380.34237255IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4290305IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018290320IPR000967Zinc finger, NF-X1-type
CDDcd060081.55E-4318367No hitNo description
PfamPF0142274322348IPR000967Zinc finger, NF-X1-type
SMARTSM004380.077329350IPR000967Zinc finger, NF-X1-type
PfamPF014249.4E-5457521IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.6E-4570615IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MGVKGSIKME DGVFSCNSVC GKKLSCGNHI CRELCHPGPC GDCALLPSKV KACCCGKTSL  60
EEERHSCLDP IPTCSKVCGK RLRCGVHRCE AVCHSGDCAP CLVPVNQRCR CGSTSRTVEC  120
YRTQAEDEQF TCDRPCGQKK NCGRHRCSER CCPLSNPKNS ITGGWNPHFC SMPCEKKLRC  180
GQHSCESLCH SGHCPPCLET IFTDLTCACG RTSIPPPLPC GTPLPSCQLP CSVSQPCGHP  240
PTHSCHFGDC LPCAVPVAKE CVGGHVILRN IPCGSKDIRC NKLCGKTRQC GLHACARTCH  300
PSPCDVSAGP SNGSRDSCGQ TCGAPRRDCR HSCTALCHPS SSCPDVRCEF PVTITCSCGR  360
ITANVPCDAG GQIVDSVFEA SIIHKLPSSL QPIELNGKKV PLGQRKLTCD DECAKMEKKK  420
VLSDAFGITP PNLEALHFGE NAAVSEVLGE LLRRDAKWVL SIEERCKFLV LGRSRGGVNA  480
LKVHVFCPMS KEKRDAIRLI AARWKLSVNA AGWEPKRFIA VHVTPKSKAP TRILGPKGCT  540
VNNIAQPAVF DSLVDMDPRL VVALFDLPRD ADISALVLRF GGECELVWLN DKNALAVFND  600
PARAATAMRR LDQGSAYCGA AVVHQSGVAS AVASATNVWG VSGGAKDGGG VAALKGNPWK  660
KAVVQEPHLR ESLWDADEWS KNPTDLAAPS AWRANEAPPT ASSNRWSVLE PEITSSLPRV  720
SITIQKPVTE TEVGGSVLPP KPQDVGIDDM ADVVDDWDKA YD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024937
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341494.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]