PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400024938
Common NameLOC102586108
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-X1
Protein Properties Length: 1126aa    MW: 122289 Da    PI: 8.1147
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400024938genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.31.1e-05325343119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C+++CH GpC+ C+
  PGSC0003DMP400024938 325 CGRHRCEQTCHVGPCGHCQ 343
                           ******************7 PP
2zf-NF-X116.22.4e-05389406118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG+H C +lCH+GpC+ C
  PGSC0003DMP400024938 389 CGNHICRELCHPGPCGDC 406
                           ****************99 PP
3zf-NF-X121.55.2e-07447464118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG H+C++ CH G+C pC
  PGSC0003DMP400024938 447 CGVHRCEAVCHSGDCAPC 464
                           ****************** PP
4zf-NF-X118.64.1e-06543561119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H+C++lCH G CppC 
  PGSC0003DMP400024938 543 CGQHSCESLCHSGHCPPCL 561
                           ******************6 PP
5zf-NF-X118.15.8e-06653668116
              zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                           CG H C ++CH+ pC+
  PGSC0003DMP400024938 653 CGLHACARTCHPSPCD 668
                           ***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.15E-5146218No hitNo description
PROSITE profilePS500168.84155216IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.126158214IPR001841Zinc finger, RING-type
PROSITE patternPS013590158213IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.22E-6247308No hitNo description
SMARTSM004380.023270288IPR000967Zinc finger, NF-X1-type
PfamPF014228.4272287IPR000967Zinc finger, NF-X1-type
CDDcd060082.83E-12315363No hitNo description
PfamPF014227.7E-4325342IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021325344IPR000967Zinc finger, NF-X1-type
CDDcd060084.02E-9379424No hitNo description
PfamPF014223.3E-4389406IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0014389408IPR000967Zinc finger, NF-X1-type
CDDcd060088.25E-14437485No hitNo description
PfamPF014222.6E-6447464IPR000967Zinc finger, NF-X1-type
SMARTSM004385.6E-5447466IPR000967Zinc finger, NF-X1-type
PfamPF0142219505516IPR000967Zinc finger, NF-X1-type
SMARTSM00438200505539IPR000967Zinc finger, NF-X1-type
CDDcd060083.13E-9533585No hitNo description
PfamPF014221.0E-4543560IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4543562IPR000967Zinc finger, NF-X1-type
CDDcd060081.74E-4590638No hitNo description
SMARTSM004380.34600618IPR000967Zinc finger, NF-X1-type
PfamPF014229.3E-4653668IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018653683IPR000967Zinc finger, NF-X1-type
CDDcd060082.71E-4681730No hitNo description
PfamPF01422110685711IPR000967Zinc finger, NF-X1-type
SMARTSM004380.077692713IPR000967Zinc finger, NF-X1-type
PfamPF014241.5E-4820884IPR001374R3H domain
Gene3DG3DSA:3.30.70.3302.7E-4933978IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1126 aa     Download sequence    Send to blast
MSFPAQNNRR NNNSNRPRNI NNNPVVQSGG ARREWVARGS TPTNTVPFST APVTPVSTTT  60
VVTPGFGGNG RDNDNVPVVP VNRFQNQNQT YVEPKFNRGT YGNQRERGRG SYNHQENRME  120
RPVREVSGRI NQEQVKDPNL PQLVQEIEEK LLKGNIECMI CYDMVRRSAP MWSCSSCYSI  180
FHLHCTKKWA RAPTSVDTSA EKNQRFNWRC PGCQSVQLTS SRDIRYLCFC GKRQDPPSDL  240
YLTPHSCGEP CGKKLEKELP GNGLSEEDLC PHVCVLQCHP GPCPPCKAFA PARSCPCGKE  300
VITTRCSDRK SVLTCGQQCG KLLDCGRHRC EQTCHVGPCG HCQIVVDAYC FCKKKTESVL  360
CGDMGVKGSI KMEDGVFSCN SVCGKKLSCG NHICRELCHP GPCGDCALLP SKVKACCCGK  420
TSLEEERHSC LDPIPTCSKV CGKRLRCGVH RCEAVCHSGD CAPCLVPVNQ RCRCGSTSRT  480
VECYRTQAED EQFTCDRPCG QKKNCGRHRC SERCCPLSNP KNSITGGWNP HFCSMPCEKK  540
LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPLPSC QLPCSVSQPC  600
GHPPTHSCHF GDCLPCAVPV AKECVGGHVI LRNIPCGSKD IRCNKLCGKT RQCGLHACAR  660
TCHPSPCDVS AGPSNGSRDS CGQTCGAPRR DCRHSCTALC HPSSSCPDVR CEFPVTITCS  720
CGRITANVPC DAGGQIVDSV FEASIIHKLP SSLQPIELNG KKVPLGQRKL TCDDECAKME  780
KKKVLSDAFG ITPPNLEALH FGENAAVSEV LGELLRRDAK WVLSIEERCK FLVLGRSRGG  840
VNALKVHVFC PMSKEKRDAI RLIAARWKLS VNAAGWEPKR FIAVHVTPKS KAPTRILGPK  900
GCTVNNIAQP AVFDSLVDMD PRLVVALFDL PRDADISALV LRFGGECELV WLNDKNALAV  960
FNDPARAATA MRRLDQGSAY CGAAVVHQSG VASAVASATN VWGVSGGAKD GGGVAALKGN  1020
PWKKAVVQEP HLRESLWDAD EWSKNPTDLA APSAWRANEA PPTASSNRWS VLEPEITSSL  1080
PRVSITIQKP VTETEVGGSV LPPKPQDVGI DDMADVVDDW DKAYD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400024938
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384620.0AC238462.1 Solanum lycopersicum chromosome 3 clone C03HBa0203H10, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341494.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLM1B4730.0M1B473_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000367740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]