PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025209
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 259aa    MW: 28601.6 Da    PI: 4.2471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025209genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1752101255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+G+r +  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+++l+g
  PGSC0003DMP400025209  52 IYRGIRMRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAALALRG 101
                           69****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1251101IPR001471AP2/ERF domain
CDDcd000186.36E-3151111No hitNo description
SMARTSM003801.4E-3152115IPR001471AP2/ERF domain
PROSITE profilePS5103222.07652109IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2152111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-3152111IPR001471AP2/ERF domain
PRINTSPR003678.8E-95364IPR001471AP2/ERF domain
PRINTSPR003678.8E-97591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNIFETYYSD PLILTESSSS SSSSSDEEII LASNNPKRPA GRKKFRETRH PIYRGIRMRN  60
SGKWVCEVRE PNKKSRIWLG TFPTAEMAAR AHDVAALALR GRSACLNFAD SAWRLPIPAS  120
SNSKDIQKAA AEAAEIFRPS SSSEESEEVS GESDYSTPET PENAFSAAAE IFRPSSEESE  180
EVSGESDNST PETPENAFFM NEEAPESSFF MDEEALFFMP GLIANMAEGL MLPPPQCAEM  240
GDHYVEADAY MTLWNYSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14501081271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025209
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3653840.0EU365384.1 Solanum tuberosum cultivar Umatilla CRT binding factor 3, CRT binding factor 1, CRT binding factor 2A, and CRT binding factor 2B genes, complete cds.
GenBankEU8496730.0EU849673.1 Solanum tuberosum AP2 domain CBF protein (CBF1) mRNA, CBF1-A allele, complete cds.
GenBankEU8496740.0EU849674.1 Solanum tuberosum AP2 domain CBF protein (CBF1) gene, CBF1-A allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274856.11e-158CBF2
SwissprotQ9FJ931e-72DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLM1B4U80.0M1B4U8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000371210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.15e-61dehydration response element B1A
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  4. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  5. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]