PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025228
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 261aa    MW: 29405.3 Da    PI: 4.4933
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025228genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.1e-3426109294
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y+++ed++++++isw+e+g++f+v+++ efak++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g+
  PGSC0003DMP400025228  26 FLTKTYQLIEDQSIDDVISWNEDGSTFIVWNPAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDSFRRGS 105
                           9*****************************************************************99.........**********99 PP

                           XXXX CS
          HSF_DNA-bind  91 kell 94 
                           + +l
  PGSC0003DMP400025228 106 TAEL 109
                           8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5022116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.36E-3223108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3026109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MTPQPIDRNG GETTAGETQR SVPTPFLTKT YQLIEDQSID DVISWNEDGS TFIVWNPAEF  60
AKDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDS FRRGSTAELL GENERLRLEN  120
LQLNKELNSM KKLCGNIYGM MSNYAQPSSS GNQSAESSSP GLKPLDLLRT EQYLGESQVK  180
AVEDGESLEE PEARLFGFSI GMKRVREGEE ERTDHAQDLQ LQQPGTTDVK SEASDQESNG  240
ESEERSWLVQ CGGRNQRTCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-22610412118Heat shock factor protein 1
5d5v_B5e-22610412118Heat shock factor protein 1
5d5v_D5e-22610412118Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-154HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-154HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166754.11e-107PREDICTED: heat stress transcription factor B-2a-like
TrEMBLM1B4W60.0M1B4W6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000371440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-53heat shock transcription factor B2A
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]