PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025392
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 224aa    MW: 24536.4 Da    PI: 8.3684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025392genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-193078355
                   AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aaka++ a++ l+g
  PGSC0003DMP400025392 30 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAAKAYDTAARTLRG 78
                          8*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.36E-302986No hitNo description
SMARTSM003802.0E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103222.9722986IPR001471AP2/ERF domain
PfamPF008477.7E-122978IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-213087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-313086IPR001471AP2/ERF domain
PRINTSPR003674.7E-103041IPR001471AP2/ERF domain
PRINTSPR003674.7E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MRRGRATSAA AAAAVPVKPD GSGGLNEIRF RGVRKRPWGR FAAEIRDPWK KTRVWLGTFD  60
SAEDAAKAYD TAARTLRGPK AKTNFPLPLY SQHHQFNQSL NPNDRLVDPR LYSQEAPIVC  120
QRPTSSGMSS TVESFSGPRP PRQQTAVLPS RKHPRSPPVE PDDCRSDCDS SSSVVEDGDC  180
EGGNDNIVSS SFRNPLPFDL NFPPPMDDVY ANSNDLYCTA LCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-203091668ATERF1
3gcc_A2e-203091668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025392
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258590.0JN125859.1 Solanum tuberosum ethylene response factor ERF4 (ERF4) mRNA, complete cds.
GenBankJX8274080.0JX827408.1 UNVERIFIED: Solanum tuberosum AP2 protein c6-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305578.11e-160ethylene-responsive transcription factor 3-like
SwissprotQ9SXS81e-75ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLM1B5A11e-163M1B5A1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000373591e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33302347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.19e-41ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]