PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025606
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 211aa    MW: 23785.3 Da    PI: 8.3658
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025606genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-18110205299
                           EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                              + p  v+++ +l +p +f++++ ++  e++ + l+ ++grsW+ kl   ++ +  + ++GW++Fv +n+Lke D++vF+l++  e 
  PGSC0003DMP400025606 110 TVSMQPTCVSRKFQLDIPVEFFKKCLNE--EETIVNLRVSNGRSWRAKLLDIQSNCPKMESSGWRDFVLDNNLKEHDTCVFELIDGIEP 196
                           556777789999*************544..4458***************65555555899***********************988555 PP

                           ..EEEEE-S CS
                    B3  91 elvvkvfrk 99 
                            l v++fr+
  PGSC0003DMP400025606 197 MLDVTIFRA 205
                           588888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-22106205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-22106206IPR015300DNA-binding pseudobarrel domain
CDDcd100175.57E-23107204No hitNo description
PfamPF023621.3E-16109205IPR003340B3 DNA binding domain
SMARTSM010196.7E-17109206IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31109206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MHNKTPKNKV VADSPYCIRQ NLGLPASSPS YQPVRVKLEK PDNLFCAAEK VKGRETNNVK  60
LDTGDLEGNL IAASYKGKDS TASEMTVLGK KKMLPSEKHN RDMYFNPHFT VSMQPTCVSR  120
KFQLDIPVEF FKKCLNEEET IVNLRVSNGR SWRAKLLDIQ SNCPKMESSG WRDFVLDNNL  180
KEHDTCVFEL IDGIEPMLDV TIFRATTPVS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025606
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-116HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350377.11e-152PREDICTED: uncharacterized protein LOC102594229
TrEMBLM1B5P81e-156M1B5P8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000376881e-151(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-12related to vernalization1 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]