PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025628
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 183aa    MW: 21336.9 Da    PI: 5.6059
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025628genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-094262346
                          -HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                          +W++Ia++++ gRt++++k++w++
  PGSC0003DMP400025628  4 RWSKIAQHLP-GRTDNEIKNYWRT 26
                          4*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.921132IPR017930Myb domain
SuperFamilySSF466893.43E-7331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-11427IPR009057Homeodomain-like
CDDcd001672.37E-6426No hitNo description
PfamPF002491.5E-7426IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MCYRWSKIAQ HLPGRTDNEI KNYWRTRVQK QARQLKVDSN SKKFVEAIKN LWVPRLLEKM  60
EQCSSSSIEK KLPNLPLINN NQEPCTKHNK SHDTNNNHNT TWGSLENSLD SMNVLNENLN  120
SILQDDECYH VGSFIQQPEH LTYQEMSISE CEVAEANWLN DEGSLWNMDE LWQFKKLGDV  180
DI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025628
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344301.21e-128PREDICTED: transcription factor MYB108
TrEMBLM1B5S01e-132M1B5S0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000377161e-127(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-34myb domain protein 62
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]