PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025975
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 129aa    MW: 14532.4 Da    PI: 5.8803
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025975genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.14.3e-2627329100
                DUF260  29 kfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                           kf +vhk+FGasn++kll++lp+++r da++slvyeA+ar+rdP+yG++gvi++l+ q+ +l+a++al++++
  PGSC0003DMP400025975   2 KFIVVHKIFGASNIIKLLQELPTTQRADAVQSLVYEANARMRDPIYGSAGVISHLHDQMTKLQAQVALAQAH 73 
                           7999****************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.699174IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-24271IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MKFIVVHKIF GASNIIKLLQ ELPTTQRADA VQSLVYEANA RMRDPIYGSA GVISHLHDQM  60
TKLQAQVALA QAHISNLQSQ NANLMTLIPK QQSLSDHYYP FQDSTPLSYD DDTDIWHLGE  120
TTWESFWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-2126739104LOB family transfactor Ramosa2.1
5ly0_B1e-2126739104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025975
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384521e-140AC238452.1 Solanum lycopersicum chromosome 1 clone C01HBa0133B03, complete sequence.
GenBankHG9755131e-140HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340077.17e-92PREDICTED: LOB domain-containing protein 1-like
TrEMBLM1B6J04e-90M1B6J0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000382486e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-36LOB domain-containing protein 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]