PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400026056

Common Name

LOC102585505

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 259aa MW: 29093.8 Da PI: 9.918

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400026056	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.9e-32	164	217	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PGSC0003DMP400026056 164 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 217 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-15	161	217	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-29	161	217	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-24	164	217	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-7	165	216	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MELFPAQPDL SLKISPPNIK PSSSTWKRKI TSEDDVHMDL GFWKRAHVVE STNSSNTSSC 60 FDLSLSNNPT KPNYLHNLKN YNTSQQNQMI IRGIPVYHQK PFASTTTTTT TFPIPSSPCS 120 IISNNNINNT ISSCASTRPN FQQGGFFRSR FLSRYPVKRS TRAPRMRWTS TLHARFVHAV 180 ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRSASSGQS EVFDNLSSGD 240 TSEELMVDEY FDSKSKLI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	165	219	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400026056

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009292	0.0	AP009292.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0320P23, complete sequence.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352907.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	2e-51	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M1B6R0	0.0	M1B6R0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400038366	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-51	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400026056
Entrez Gene	102585505

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]