PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026158
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 211aa    MW: 23326.5 Da    PI: 4.9479
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026158genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.26.6e-173691358
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58
                          ++kr rr ++NRe+ArrsR+RK+a ++ Le  v+++ +eN++L k+l   +++++ 
  PGSC0003DMP400026158 36 DIKRIRRQASNRESARRSRRRKQAHLADLESQVDQFRGENESLFKQLADATQQYKD 91
                          79******************************************887777777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.6E-133190No hitNo description
SMARTSM003388.1E-173498IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0363688IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.92E-123789No hitNo description
PfamPF001701.9E-143791IPR004827Basic-leucine zipper domain
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRDNQAMGAT SGSYQSDDDD LEGDVDPCEE STDPSDIKRI RRQASNRESA RRSRRRKQAH  60
LADLESQVDQ FRGENESLFK QLADATQQYK DSLTNNRVLK SNVEELRAKV KLAEVRAARG  120
SVSSSLNHLF LNYLTPPQSL GTNNNNNNIT MCRLDNVSPT INVPGEDSWG GISGQNPMIG  180
VENVNAFDRN LNNGAMSDNA SCISEVWSFK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15057RRSRRRKQ
25257SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026158
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-117HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357031.21e-152PREDICTED: basic leucine zipper 9
SwissprotQ6H5002e-52RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLM1B6Y81e-153M1B6Y8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000384931e-152(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-38basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]