PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026159
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 350aa    MW: 38555.3 Da    PI: 5.5812
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026159genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1521.5e-16175229357
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                           ++kr rr ++NRe+ArrsR+RK+a ++ Le  v+++ +eN++L k+l   +++++
  PGSC0003DMP400026159 175 DIKRIRRQASNRESARRSRRRKQAHLADLESQVDQFRGENESLFKQLADATQQYK 229
                           69******************************************88777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-12170229No hitNo description
SMARTSM003388.1E-17173237IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.036175227IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-11176228No hitNo description
PfamPF001704.0E-14176230IPR004827Basic-leucine zipper domain
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MANFPSRDMK KSPSVLALEE FVNHNKLFYG EDAKIGDVFG GNDHQQNINN NNNNNINHHD  60
HNNNNGHHHA QLFDDICSIA PSFTMSNQDI LSGFSNCALT EKPLWSPNIT PKQSSISVTG  120
DSQSSICAGS PTPTIIMPKM RDNQAMGATS GSYQSDDDDL EGDVDPCEES TDPSDIKRIR  180
RQASNRESAR RSRRRKQAHL ADLESQVDQF RGENESLFKQ LADATQQYKD SLTNNRVLKS  240
NVEELRAKVK LAEVRAARGS VSSSLNHLFL NYLTPPQSLG TNNNNNNITM CRLDNVSPTI  300
NVPGEDSWGG ISGQNPMIGV ENVNAFDRNL NNGAMSDNAS CISEVWSFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189196RRSRRRKQ
2191196SRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-117HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357031.20.0PREDICTED: basic leucine zipper 9
TrEMBLM1B6Y90.0M1B6Y9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000384930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81392229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.19e-42basic leucine zipper 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]