PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400026632

Common Name

LOC102581099

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YC

Protein Properties

Length: 254aa MW: 27672.7 Da PI: 4.8787

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400026632	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	145.1	1.6e-45	41	144	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 q++ fw+ q ie+ dfk+h++P++rik+i+k++++v ++sae+P+l+skacelf+leltlrsw ha+en+r tlkk+d aaa+ rt PGSC0003DMP400026632 41 QMRIFWNCQreeIEELDDFKHHQFPISRIKRIIKSENNVLKVSAETPILFSKACELFVLELTLRSWFHAQENNRGTLKKTDFAAAIRRT 129 79***9977789999******************************************************************** PP NF-YC 87 difdflvdivprdel 101 +ifdfl d+vp de+ PGSC0003DMP400026632 130 EIFDFLADVVPADEI 144 **********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.38E-25	50	151	IPR009072	Histone-fold
Pfam	PF00808	1.2E-13	63	126	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.0E-28	64	140	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MENNHQQSAE PLYPGYPFHQ MLMLQQHEQL QLQQQQQVEQ QMRIFWNCQR EEIEELDDFK 60 HHQFPISRIK RIIKSENNVL KVSAETPILF SKACELFVLE LTLRSWFHAQ ENNRGTLKKT 120 DFAAAIRRTE IFDFLADVVP ADEINEVATG FGPGMVGPTA GGGFPYFYPP MGQLAMPGVM 180 LGGPAMPGVM PGGLAMPGPM LGGPAMPEVM IGGPAMPVVA PSVYVQPPLQ AWQPAGDNSN 240 AGGGNGGQGN FGP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-36	49	140	3	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400026632

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006351461.1	0.0	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	1e-61	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	M1B803	0.0	M1B803_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400039254	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA20820	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-48	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400026632
Entrez Gene	102581099

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]