PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026671
Common NameLOC102588157
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23318.9 Da    PI: 10.5777
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026671genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.6e-29959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien++nrqvtfskRrng+lKKA+ELS+LCdaeva+++fs++gk y ++s
  PGSC0003DMP400026671  9 KRIENQTNRQVTFSKRRNGLLKKAYELSILCDAEVALLLFSPSGKAYNFAS 59
                          79**********************************************986 PP
2K-box67.16.1e-2381170998
                 K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           +  + +e ++++++ + + i++L+   +hl Ge+L+sL +keL+qLe+qL  ++++iRskK +++ e+i+ l+++ k l+een  L+k+
  PGSC0003DMP400026671  81 QGLRAMEVWRTKIDDMTRTIHELEARDKHLAGEELSSLGMKELKQLERQLRIGVERIRSKKRRIISEHIHGLKRRHKILHEENIHLQKQ 169
                           55667899*****************9*************************************************************99 PP

                 K-box  98 l 98 
                           +
  PGSC0003DMP400026671 170 V 170
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.646161IPR002100Transcription factor, MADS-box
CDDcd002654.81E-38278No hitNo description
SuperFamilySSF554553.14E-31278IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-31323IPR002100Transcription factor, MADS-box
PfamPF003198.3E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2185170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.70986178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGRGKVELKR IENQTNRQVT FSKRRNGLLK KAYELSILCD AEVALLLFSP SGKAYNFASH  60
DIERTILRYK NEVGLSKNSD QGLRAMEVWR TKIDDMTRTI HELEARDKHL AGEELSSLGM  120
KELKQLERQL RIGVERIRSK KRRIISEHIH GLKRRHKILH EENIHLQKQV RLSEIEGSSR  180
ILDSEASELL SKGRRIIYDL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-23169169Myocyte-specific enhancer factor 2B
1tqe_Q3e-23169169Myocyte-specific enhancer factor 2B
1tqe_R3e-23169169Myocyte-specific enhancer factor 2B
1tqe_S3e-23169169Myocyte-specific enhancer factor 2B
6byy_A4e-23169169MEF2 CHIMERA
6byy_B4e-23169169MEF2 CHIMERA
6byy_C4e-23169169MEF2 CHIMERA
6byy_D4e-23169169MEF2 CHIMERA
6bz1_A4e-23169169MEF2 CHIMERA
6bz1_B4e-23169169MEF2 CHIMERA
6bz1_C4e-23169169MEF2 CHIMERA
6bz1_D4e-23169169MEF2 CHIMERA
6c9l_A3e-23169169Myocyte-specific enhancer factor 2B
6c9l_B3e-23169169Myocyte-specific enhancer factor 2B
6c9l_C3e-23169169Myocyte-specific enhancer factor 2B
6c9l_D3e-23169169Myocyte-specific enhancer factor 2B
6c9l_E3e-23169169Myocyte-specific enhancer factor 2B
6c9l_F3e-23169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026671
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2706240.0KF270624.1 Solanum lycopersicum cultivar Florida Petite TM8-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166003.11e-141PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
TrEMBLM1B8371e-140M1B837_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000393131e-140(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.17e-43AGAMOUS-like 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]